IL_5ND8_061

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5ND8|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_061 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.139

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5ND8|1|A|C|1730
5ND8|1|A|G|1731
5ND8|1|A|U|1732
5ND8|1|A|A|1733
5ND8|1|A|A|1734
5ND8|1|A|C|1735
*
5ND8|1|A|G|1740
5ND8|1|A|G|1741
5ND8|1|A|A|1742
5ND8|1|A|G|1743
5ND8|1|A|A|1744
5ND8|1|A|A|1745
5ND8|1|A|G|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA