IL_5ND8_064

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

5ND8|1|A|U|1828, 5ND8|1|A|U|1843, 5ND8|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_064 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1306

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5ND8|1|A|U|1825
5ND8|1|A|G|1826
5ND8|1|A|C|1827
5ND8|1|A|U|1828
5ND8|1|A|A|1829
5ND8|1|A|A|1830
5ND8|1|A|A|1831
*
5ND8|1|A|U|1840
5ND8|1|A|G|1841
5ND8|1|A|A|1842
5ND8|1|A|U|1843
5ND8|1|A|G|1844
5ND8|1|A|U|1845
5ND8|1|A|A|1846
5ND8|1|A|U|1847
5ND8|1|A|A|1848

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2