IL_5ND8_068

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_068 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.2199

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5ND8|1|A|U|1878
5ND8|1|A|U|1879
5ND8|1|A|A|1880
5ND8|1|A|A|1881
5ND8|1|A|G|1882
*
5ND8|1|A|C|1914
5ND8|1|A|G|1915
5ND8|1|A|A|1916
5ND8|1|A|A|1917
5ND8|1|A|G|1918

Current chains

Chain A

23S ribosomal RNA

Nearby chains