IL_5ND8_072
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 5ND8|1|A|A|1965, 5ND8|1|A|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ND8_072 not in the Motif Atlas
- Homologous match to IL_5J7L_319
- Geometric discrepancy: 0.2123
- The information below is about IL_5J7L_319
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
5ND8|1|A|C|1961
5ND8|1|A|G|1962
5ND8|1|A|A|1963
5ND8|1|A|A|1964
5ND8|1|A|A|1965
5ND8|1|A|U|1966
5ND8|1|A|U|1967
5ND8|1|A|C|1968
5ND8|1|A|C|1969
5ND8|1|A|U|1970
5ND8|1|A|U|1971
5ND8|1|A|G|1972
*
5ND8|1|A|C|1988
5ND8|1|A|C|1989
5ND8|1|A|C|1990
5ND8|1|A|G|1991
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
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