IL_5ND8_076

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAG*CUACCC

Length

10 nucleotides

Bulged bases

5ND8|1|A|A|2466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_076 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.231

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5ND8|1|A|G|2096
5ND8|1|A|G|2097
5ND8|1|A|A|2098
5ND8|1|A|G|2099
*
5ND8|1|A|C|2464
5ND8|1|A|U|2465
5ND8|1|A|A|2466
5ND8|1|A|C|2467
5ND8|1|A|C|2468
5ND8|1|A|C|2469

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain F

50S ribosomal protein L4