IL_5ND8_077

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAG*CGGG

Length

7 nucleotides

Bulged bases

5ND8|1|A|G|2265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_077 not in the Motif Atlas

Homologous match to IL_4WF9_082

Geometric discrepancy: 0.1264

The information below is about IL_4WF9_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

5ND8|1|A|U|2108
5ND8|1|A|A|2109
5ND8|1|A|G|2110
*
5ND8|1|A|C|2263
5ND8|1|A|G|2264
5ND8|1|A|G|2265
5ND8|1|A|G|2266

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain D

50S ribosomal protein L2