IL_5ND8_080

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUACAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5ND8|1|A|U|2138, 5ND8|1|A|U|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND8|1|A|G|2137
5ND8|1|A|U|2138
5ND8|1|A|A|2139
5ND8|1|A|C|2140
5ND8|1|A|A|2141
5ND8|1|A|G|2142
5ND8|1|A|G|2143
5ND8|1|A|A|2144
5ND8|1|A|U|2145
5ND8|1|A|A|2146
5ND8|1|A|G|2147
*
5ND8|1|A|C|2205
5ND8|1|A|C|2206

Current chains

Chain A

23S ribosomal RNA

Nearby chains