IL_5ND8_081

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAG*CGCUGGUGGGAUAC

Length

18 nucleotides

Bulged bases

5ND8|1|A|U|2194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND8|1|A|G|2151
5ND8|1|A|G|2152
5ND8|1|A|A|2153
5ND8|1|A|G|2154
*
5ND8|1|A|C|2188
5ND8|1|A|G|2189
5ND8|1|A|C|2190
5ND8|1|A|U|2191
5ND8|1|A|G|2192
5ND8|1|A|G|2193
5ND8|1|A|U|2194
5ND8|1|A|G|2195
5ND8|1|A|G|2196
5ND8|1|A|G|2197
5ND8|1|A|A|2198
5ND8|1|A|U|2199
5ND8|1|A|A|2200
5ND8|1|A|C|2201

Current chains

Chain A

23S ribosomal RNA

Nearby chains