IL_5ND8_082

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUUGAAA*UGGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_082 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.4877

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5ND8|1|A|C|2156
5ND8|1|A|U|2157
5ND8|1|A|U|2158
5ND8|1|A|U|2159
5ND8|1|A|G|2160
5ND8|1|A|A|2161
5ND8|1|A|A|2162
5ND8|1|A|A|2163
*
5ND8|1|A|U|2182
5ND8|1|A|G|2183
5ND8|1|A|G|2184
5ND8|1|A|A|2185
5ND8|1|A|G|2186

Current chains

Chain A

23S ribosomal RNA

Nearby chains