IL_5ND8_105

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_105 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.17

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

5ND8|1|A|U|2867
5ND8|1|A|G|2868
5ND8|1|A|G|2869
5ND8|1|A|A|2870
5ND8|1|A|A|2871
5ND8|1|A|G|2872
*
5ND8|1|A|U|2885
5ND8|1|A|G|2886
5ND8|1|A|G|2887
5ND8|1|A|A|2888
5ND8|1|A|G|2889

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L17

Chain S

50S ribosomal protein L19