IL_5ND8_107

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGA*UGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_107 not in the Motif Atlas

Homologous match to IL_4WF9_110

Geometric discrepancy: 0.242

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

5ND8|1|B|G|5
5ND8|1|B|U|6
5ND8|1|B|G|7
5ND8|1|B|A|8
*
5ND8|1|B|U|107
5ND8|1|B|G|108
5ND8|1|B|C|109
5ND8|1|B|C|110

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L18