IL_5ND8_110

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_110 not in the Motif Atlas

Homologous match to IL_7RQB_113

Geometric discrepancy: 0.2731

The information below is about IL_7RQB_113

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_09061.8

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

14

Unit IDs

5ND8|1|B|C|28
5ND8|1|B|C|29
*
5ND8|1|B|G|49
5ND8|1|B|A|50
5ND8|1|B|A|51
5ND8|1|B|G|52

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L5

Chain R

50S ribosomal protein L18