IL_5ND8_130

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_130 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2408

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5ND8|1|a|U|417
5ND8|1|a|G|418
5ND8|1|a|A|419
5ND8|1|a|U|420
5ND8|1|a|G|421
5ND8|1|a|A|422
5ND8|1|a|A|423
5ND8|1|a|G|424
*
5ND8|1|a|C|435
5ND8|1|a|G|436
5ND8|1|a|U|437
5ND8|1|a|A|438
5ND8|1|a|A|439
5ND8|1|a|A|440
5ND8|1|a|A|441

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4