IL_5ND8_166

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAA*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_166 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.2277

The information below is about IL_5J7L_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5ND8|1|a|C|1270
5ND8|1|a|G|1271
5ND8|1|a|A|1272
5ND8|1|a|A|1273
5ND8|1|a|A|1274
*
5ND8|1|a|U|1283
5ND8|1|a|C|1284
5ND8|1|a|A|1285
5ND8|1|a|A|1286
5ND8|1|a|G|1287

Current chains

Chain a

16S ribosomal RNA

Nearby chains