IL_5ND8_179

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAUACGGAGUUACAAAGGAC*GUCUCUCUUG

Length

31 nucleotides

Bulged bases

5ND8|1|A|A|314, 5ND8|1|A|U|320, 5ND8|1|A|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND8|1|A|C|310
5ND8|1|A|U|311
5ND8|1|A|A|312
5ND8|1|A|U|313
5ND8|1|A|A|314
5ND8|1|A|C|315
5ND8|1|A|G|316
5ND8|1|A|G|317
5ND8|1|A|A|318
5ND8|1|A|G|319
5ND8|1|A|U|320
5ND8|1|A|U|321
5ND8|1|A|A|322
5ND8|1|A|C|323
5ND8|1|A|A|324
5ND8|1|A|A|325
5ND8|1|A|A|326
5ND8|1|A|G|327
5ND8|1|A|G|328
5ND8|1|A|A|329
5ND8|1|A|C|330
*
5ND8|1|A|G|396
5ND8|1|A|U|397
5ND8|1|A|C|398
5ND8|1|A|U|399
5ND8|1|A|C|400
5ND8|1|A|U|401
5ND8|1|A|C|402
5ND8|1|A|U|403
5ND8|1|A|U|404
5ND8|1|A|G|405

Current chains

Chain A

23S ribosomal RNA

Nearby chains