IL_5ND8_180

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAGGCGAAGCGUGCGAUUGGAUUGCACGUCUAAG*UGAUGGGGAGAAGACAUUGAGUCUUCGAGUCGUUGAUUU

Length

74 nucleotides

Bulged bases

5ND8|1|A|A|1489, 5ND8|1|A|C|1495, 5ND8|1|A|A|1497, 5ND8|1|A|U|1503, 5ND8|1|A|G|1569, 5ND8|1|A|G|1577, 5ND8|1|A|A|1580, 5ND8|1|A|G|1583, 5ND8|1|A|A|1584, 5ND8|1|A|G|1585, 5ND8|1|A|U|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND8|1|A|A|1481
5ND8|1|A|U|1482
5ND8|1|A|A|1483
5ND8|1|A|G|1484
5ND8|1|A|G|1485
5ND8|1|A|C|1486
5ND8|1|A|G|1487
5ND8|1|A|A|1488
5ND8|1|A|A|1489
5ND8|1|A|G|1490
5ND8|1|A|C|1491
5ND8|1|A|G|1492
5ND8|1|A|U|1493
5ND8|1|A|G|1494
5ND8|1|A|C|1495
5ND8|1|A|G|1496
5ND8|1|A|A|1497
5ND8|1|A|U|1498
5ND8|1|A|U|1499
5ND8|1|A|G|1500
5ND8|1|A|G|1501
5ND8|1|A|A|1502
5ND8|1|A|U|1503
5ND8|1|A|U|1504
5ND8|1|A|G|1505
5ND8|1|A|C|1506
5ND8|1|A|A|1507
5ND8|1|A|C|1508
5ND8|1|A|G|1509
5ND8|1|A|U|1510
5ND8|1|A|C|1511
5ND8|1|A|U|1512
5ND8|1|A|A|1513
5ND8|1|A|A|1514
5ND8|1|A|G|1515
*
5ND8|1|A|U|1565
5ND8|1|A|G|1566
5ND8|1|A|A|1567
5ND8|1|A|U|1568
5ND8|1|A|G|1569
5ND8|1|A|G|1570
5ND8|1|A|G|1571
5ND8|1|A|G|1572
5ND8|1|A|A|1573
5ND8|1|A|G|1574
5ND8|1|A|A|1575
5ND8|1|A|A|1576
5ND8|1|A|G|1577
5ND8|1|A|A|1578
5ND8|1|A|C|1579
5ND8|1|A|A|1580
5ND8|1|A|U|1581
5ND8|1|A|U|1582
5ND8|1|A|G|1583
5ND8|1|A|A|1584
5ND8|1|A|G|1585
5ND8|1|A|U|1586
5ND8|1|A|C|1587
5ND8|1|A|U|1588
5ND8|1|A|U|1589
5ND8|1|A|C|1590
5ND8|1|A|G|1591
5ND8|1|A|A|1592
5ND8|1|A|G|1593
5ND8|1|A|U|1594
5ND8|1|A|C|1595
5ND8|1|A|G|1596
5ND8|1|A|U|1597
5ND8|1|A|U|1598
5ND8|1|A|G|1599
5ND8|1|A|A|1600
5ND8|1|A|U|1601
5ND8|1|A|U|1602
5ND8|1|A|U|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L17