IL_5ND8_184

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_184 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.225

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5ND8|1|A|U|1891
5ND8|1|A|U|1892
5ND8|1|A|A|1893
5ND8|1|A|G|1894
*
5ND8|1|A|C|1901
5ND8|1|A|G|1902
5ND8|1|A|A|1903
5ND8|1|A|A|1904
5ND8|1|A|G|1905

Current chains

Chain A

23S ribosomal RNA

Nearby chains