IL_5ND8_187

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAGAACAUAUGUG*CACAUCUUGACGGUAC

Length

31 nucleotides

Bulged bases

5ND8|1|a|A|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND8|1|a|G|454
5ND8|1|a|G|455
5ND8|1|a|A|456
5ND8|1|a|A|457
5ND8|1|a|G|458
5ND8|1|a|A|459
5ND8|1|a|A|460
5ND8|1|a|C|461
5ND8|1|a|A|462
5ND8|1|a|U|463
5ND8|1|a|A|464
5ND8|1|a|U|465
5ND8|1|a|G|466
5ND8|1|a|U|467
5ND8|1|a|G|468
*
5ND8|1|a|C|481
5ND8|1|a|A|482
5ND8|1|a|C|483
5ND8|1|a|A|484
5ND8|1|a|U|485
5ND8|1|a|C|486
5ND8|1|a|U|487
5ND8|1|a|U|488
5ND8|1|a|G|489
5ND8|1|a|A|490
5ND8|1|a|C|491
5ND8|1|a|G|492
5ND8|1|a|G|493
5ND8|1|a|U|494
5ND8|1|a|A|495
5ND8|1|a|C|496

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16