IL_5ND8_188

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCA*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_188 not in the Motif Atlas

Geometric match to IL_406D_004

Geometric discrepancy: 0.2441

The information below is about IL_406D_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

5ND8|1|a|C|620
5ND8|1|a|C|621
5ND8|1|a|A|622
*
5ND8|1|a|U|634
5ND8|1|a|G|635
5ND8|1|a|G|636

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16