IL_5ND9_008

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUAGUAG*CGAAAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND9_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.1492

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

5ND9|1|A|C|241
5ND9|1|A|U|242
5ND9|1|A|U|243
5ND9|1|A|A|244
5ND9|1|A|G|245
5ND9|1|A|U|246
5ND9|1|A|A|247
5ND9|1|A|G|248
*
5ND9|1|A|C|256
5ND9|1|A|G|257
5ND9|1|A|A|258
5ND9|1|A|A|259
5ND9|1|A|A|260
5ND9|1|A|U|261
5ND9|1|A|G|262

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain O

50S ribosomal protein L15