IL_5ND9_029

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

5ND9|1|A|C|1039

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND9_029 not in the Motif Atlas

Homologous match to IL_4WF9_035

Geometric discrepancy: 0.185

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

5ND9|1|A|C|1038
5ND9|1|A|C|1039
5ND9|1|A|A|1040
*
5ND9|1|A|U|1203
5ND9|1|A|G|1204

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L30

Chain M

50S ribosomal protein L13

Chain T

50S ribosomal protein L20

Chain U

50S ribosomal protein L21