IL_5ND9_037

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCAGACAA*UCGAG

Length

14 nucleotides

Bulged bases

5ND9|1|A|A|1090

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND9_037 not in the Motif Atlas

Homologous match to IL_7RQB_042

Geometric discrepancy: 0.4615

The information below is about IL_7RQB_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.4

Basepair signature

cWW-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5ND9|1|A|C|1087
5ND9|1|A|C|1088
5ND9|1|A|C|1089
5ND9|1|A|A|1090
5ND9|1|A|G|1091
5ND9|1|A|A|1092
5ND9|1|A|C|1093
5ND9|1|A|A|1094
5ND9|1|A|A|1095
*
5ND9|1|A|U|1152
5ND9|1|A|C|1153
5ND9|1|A|G|1154
5ND9|1|A|A|1155
5ND9|1|A|G|1156

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L6