IL_5ND9_038

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGGA*UUUAAAGAGUGCGUAAUAGCUCACU

Length

29 nucleotides

Bulged bases

5ND9|1|A|A|1132, 5ND9|1|A|U|1138

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND9|1|A|A|1098
5ND9|1|A|G|1099
5ND9|1|A|G|1100
5ND9|1|A|A|1101
*
5ND9|1|A|U|1125
5ND9|1|A|U|1126
5ND9|1|A|U|1127
5ND9|1|A|A|1128
5ND9|1|A|A|1129
5ND9|1|A|A|1130
5ND9|1|A|G|1131
5ND9|1|A|A|1132
5ND9|1|A|G|1133
5ND9|1|A|U|1134
5ND9|1|A|G|1135
5ND9|1|A|C|1136
5ND9|1|A|G|1137
5ND9|1|A|U|1138
5ND9|1|A|A|1139
5ND9|1|A|A|1140
5ND9|1|A|U|1141
5ND9|1|A|A|1142
5ND9|1|A|G|1143
5ND9|1|A|C|1144
5ND9|1|A|U|1145
5ND9|1|A|C|1146
5ND9|1|A|A|1147
5ND9|1|A|C|1148
5ND9|1|A|U|1149

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain H

50S ribosomal protein L6