IL_5ND9_048

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAUAAUCGUUUUAAU*AUAGAAAAUA

Length

25 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND9|1|A|U|1446
5ND9|1|A|A|1447
5ND9|1|A|U|1448
5ND9|1|A|A|1449
5ND9|1|A|A|1450
5ND9|1|A|U|1451
5ND9|1|A|C|1452
5ND9|1|A|G|1453
5ND9|1|A|U|1454
5ND9|1|A|U|1455
5ND9|1|A|U|1456
5ND9|1|A|U|1457
5ND9|1|A|A|1458
5ND9|1|A|A|1459
5ND9|1|A|U|1460
*
5ND9|1|A|A|1628
5ND9|1|A|U|1629
5ND9|1|A|A|1630
5ND9|1|A|G|1631
5ND9|1|A|A|1632
5ND9|1|A|A|1633
5ND9|1|A|A|1634
5ND9|1|A|A|1635
5ND9|1|A|U|1636
5ND9|1|A|A|1637

Current chains

Chain A

23S ribosomal RNA

Nearby chains