IL_5ND9_052

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAAG*UGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND9_052 not in the Motif Atlas

Homologous match to IL_7A0S_056

Geometric discrepancy: 0.521

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5ND9|1|A|G|1518
5ND9|1|A|U|1519
5ND9|1|A|A|1520
5ND9|1|A|A|1521
5ND9|1|A|G|1522
*
5ND9|1|A|U|1558
5ND9|1|A|G|1559
5ND9|1|A|A|1560
5ND9|1|A|G|1561
5ND9|1|A|C|1562

Current chains

Chain A

23S ribosomal RNA

Nearby chains