IL_5ND9_079

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAG*CGCUGGUGGGAUAC

Length

18 nucleotides

Bulged bases

5ND9|1|A|U|2194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND9|1|A|G|2151
5ND9|1|A|G|2152
5ND9|1|A|A|2153
5ND9|1|A|G|2154
*
5ND9|1|A|C|2188
5ND9|1|A|G|2189
5ND9|1|A|C|2190
5ND9|1|A|U|2191
5ND9|1|A|G|2192
5ND9|1|A|G|2193
5ND9|1|A|U|2194
5ND9|1|A|G|2195
5ND9|1|A|G|2196
5ND9|1|A|G|2197
5ND9|1|A|A|2198
5ND9|1|A|U|2199
5ND9|1|A|A|2200
5ND9|1|A|C|2201

Current chains

Chain A

23S ribosomal RNA

Nearby chains