IL_5ND9_101

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUU*AAUAC

Length

9 nucleotides

Bulged bases

5ND9|1|A|A|2899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND9|1|A|G|2858
5ND9|1|A|G|2859
5ND9|1|A|U|2860
5ND9|1|A|U|2861
*
5ND9|1|A|A|2896
5ND9|1|A|A|2897
5ND9|1|A|U|2898
5ND9|1|A|A|2899
5ND9|1|A|C|2900

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain Q

50S ribosomal protein L17

Chain S

50S ribosomal protein L19