IL_5ND9_107
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AGGUCACA*UUAAGGU
- Length
- 15 nucleotides
- Bulged bases
- 5ND9|1|B|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ND9_107 not in the Motif Atlas
- Homologous match to IL_4WF9_113
- Geometric discrepancy: 0.31
- The information below is about IL_4WF9_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19048.1
- Basepair signature
- cWW-L-R-L-R-L-cSH-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5ND9|1|B|A|20
5ND9|1|B|G|21
5ND9|1|B|G|22
5ND9|1|B|U|23
5ND9|1|B|C|24
5ND9|1|B|A|25
5ND9|1|B|C|26
5ND9|1|B|A|27
*
5ND9|1|B|U|53
5ND9|1|B|U|54
5ND9|1|B|A|55
5ND9|1|B|A|56
5ND9|1|B|G|57
5ND9|1|B|G|58
5ND9|1|B|U|59
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L5
- Chain R
- 50S ribosomal protein L18
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