IL_5ND9_128

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND9_128 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2298

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5ND9|1|a|U|417
5ND9|1|a|G|418
5ND9|1|a|A|419
5ND9|1|a|U|420
5ND9|1|a|G|421
5ND9|1|a|A|422
5ND9|1|a|A|423
5ND9|1|a|G|424
*
5ND9|1|a|C|435
5ND9|1|a|G|436
5ND9|1|a|U|437
5ND9|1|a|A|438
5ND9|1|a|A|439
5ND9|1|a|A|440
5ND9|1|a|A|441

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4