IL_5ND9_181

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAGGCGAAGCGUGCGAUUGGAUUGCACGUCUAAG*UGAUGGGGAGAAGACAUUGAGUCUUCGAGUCGUUGAUUU

Length

74 nucleotides

Bulged bases

5ND9|1|A|A|1489, 5ND9|1|A|C|1495, 5ND9|1|A|A|1497, 5ND9|1|A|U|1498, 5ND9|1|A|U|1503, 5ND9|1|A|G|1569, 5ND9|1|A|A|1580, 5ND9|1|A|G|1583, 5ND9|1|A|A|1584, 5ND9|1|A|G|1585, 5ND9|1|A|U|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND9|1|A|A|1481
5ND9|1|A|U|1482
5ND9|1|A|A|1483
5ND9|1|A|G|1484
5ND9|1|A|G|1485
5ND9|1|A|C|1486
5ND9|1|A|G|1487
5ND9|1|A|A|1488
5ND9|1|A|A|1489
5ND9|1|A|G|1490
5ND9|1|A|C|1491
5ND9|1|A|G|1492
5ND9|1|A|U|1493
5ND9|1|A|G|1494
5ND9|1|A|C|1495
5ND9|1|A|G|1496
5ND9|1|A|A|1497
5ND9|1|A|U|1498
5ND9|1|A|U|1499
5ND9|1|A|G|1500
5ND9|1|A|G|1501
5ND9|1|A|A|1502
5ND9|1|A|U|1503
5ND9|1|A|U|1504
5ND9|1|A|G|1505
5ND9|1|A|C|1506
5ND9|1|A|A|1507
5ND9|1|A|C|1508
5ND9|1|A|G|1509
5ND9|1|A|U|1510
5ND9|1|A|C|1511
5ND9|1|A|U|1512
5ND9|1|A|A|1513
5ND9|1|A|A|1514
5ND9|1|A|G|1515
*
5ND9|1|A|U|1565
5ND9|1|A|G|1566
5ND9|1|A|A|1567
5ND9|1|A|U|1568
5ND9|1|A|G|1569
5ND9|1|A|G|1570
5ND9|1|A|G|1571
5ND9|1|A|G|1572
5ND9|1|A|A|1573
5ND9|1|A|G|1574
5ND9|1|A|A|1575
5ND9|1|A|A|1576
5ND9|1|A|G|1577
5ND9|1|A|A|1578
5ND9|1|A|C|1579
5ND9|1|A|A|1580
5ND9|1|A|U|1581
5ND9|1|A|U|1582
5ND9|1|A|G|1583
5ND9|1|A|A|1584
5ND9|1|A|G|1585
5ND9|1|A|U|1586
5ND9|1|A|C|1587
5ND9|1|A|U|1588
5ND9|1|A|U|1589
5ND9|1|A|C|1590
5ND9|1|A|G|1591
5ND9|1|A|A|1592
5ND9|1|A|G|1593
5ND9|1|A|U|1594
5ND9|1|A|C|1595
5ND9|1|A|G|1596
5ND9|1|A|U|1597
5ND9|1|A|U|1598
5ND9|1|A|G|1599
5ND9|1|A|A|1600
5ND9|1|A|U|1601
5ND9|1|A|U|1602
5ND9|1|A|U|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L17