IL_5ND9_191

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAGAACAUAUGUG*CACAUCUUGACGGUAC

Length

31 nucleotides

Bulged bases

5ND9|1|a|A|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND9|1|a|G|454
5ND9|1|a|G|455
5ND9|1|a|A|456
5ND9|1|a|A|457
5ND9|1|a|G|458
5ND9|1|a|A|459
5ND9|1|a|A|460
5ND9|1|a|C|461
5ND9|1|a|A|462
5ND9|1|a|U|463
5ND9|1|a|A|464
5ND9|1|a|U|465
5ND9|1|a|G|466
5ND9|1|a|U|467
5ND9|1|a|G|468
*
5ND9|1|a|C|481
5ND9|1|a|A|482
5ND9|1|a|C|483
5ND9|1|a|A|484
5ND9|1|a|U|485
5ND9|1|a|C|486
5ND9|1|a|U|487
5ND9|1|a|U|488
5ND9|1|a|G|489
5ND9|1|a|A|490
5ND9|1|a|C|491
5ND9|1|a|G|492
5ND9|1|a|G|493
5ND9|1|a|U|494
5ND9|1|a|A|495
5ND9|1|a|C|496

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16