IL_5ND9_192

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGAAAGCCCAC*GUGGAGGGUC

Length

22 nucleotides

Bulged bases

5ND9|1|a|U|641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND9|1|a|G|612
5ND9|1|a|U|613
5ND9|1|a|G|614
5ND9|1|a|A|615
5ND9|1|a|A|616
5ND9|1|a|A|617
5ND9|1|a|G|618
5ND9|1|a|C|619
5ND9|1|a|C|620
5ND9|1|a|C|621
5ND9|1|a|A|622
5ND9|1|a|C|623
*
5ND9|1|a|G|633
5ND9|1|a|U|634
5ND9|1|a|G|635
5ND9|1|a|G|636
5ND9|1|a|A|637
5ND9|1|a|G|638
5ND9|1|a|G|639
5ND9|1|a|G|640
5ND9|1|a|U|641
5ND9|1|a|C|642

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain h

30S ribosomal protein S8

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17