IL_5ND9_193
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ND9_193 not in the Motif Atlas
- Homologous match to IL_6CZR_409
- Geometric discrepancy: 0.1855
- The information below is about IL_6CZR_409
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5ND9|1|a|G|681
5ND9|1|a|G|682
5ND9|1|a|A|683
5ND9|1|a|A|684
5ND9|1|a|U|685
*
5ND9|1|a|G|721
5ND9|1|a|G|722
5ND9|1|a|A|723
5ND9|1|a|A|724
5ND9|1|a|C|725
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L2
- Chain f
- 30S ribosomal protein S6
- Chain k
- 30S ribosomal protein S11
- Chain r
- 30S ribosomal protein S18
- Chain u
- 30S ribosomal protein S21
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