IL_5ND9_196

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAUUG*CAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND9|1|a|C|1314
5ND9|1|a|G|1315
5ND9|1|a|G|1316
5ND9|1|a|A|1317
5ND9|1|a|U|1318
5ND9|1|a|U|1319
5ND9|1|a|G|1320
*
5ND9|1|a|C|1339
5ND9|1|a|A|1340
5ND9|1|a|U|1341
5ND9|1|a|G|1342
5ND9|1|a|A|1343
5ND9|1|a|A|1344
5ND9|1|a|G|1345

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13