IL_5NDG_015

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUGAAAUU*AACGGAUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDG|1|1|G|404
5NDG|1|1|U|405
5NDG|1|1|G|406
5NDG|1|1|A|407
5NDG|1|1|A|408
5NDG|1|1|A|409
5NDG|1|1|U|410
5NDG|1|1|U|411
*
5NDG|1|4|A|12
5NDG|1|4|A|13
5NDG|1|4|C|14
5NDG|1|4|G|15
5NDG|1|4|G|16
5NDG|1|4|A|17
5NDG|1|4|U|18
5NDG|1|4|C|19

Current chains

Chain 1

25S ribosomal RNA

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain L4

60S ribosomal protein L4-A

Chain M7

60S ribosomal protein L17-A

Chain O2

60S ribosomal protein L32