IL_5NDG_037

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

5NDG|1|1|G|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDG_037 not in the Motif Atlas

Homologous match to IL_5TBW_037

Geometric discrepancy: 0.1097

The information below is about IL_5TBW_037

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5NDG|1|1|A|983
5NDG|1|1|G|984
5NDG|1|1|U|985
*
5NDG|1|1|A|1099
5NDG|1|1|U|1100

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L7

60S ribosomal protein L7-A

Chain N1

60S ribosomal protein L21-A

Chain N9

60S ribosomal protein L29