IL_5NDG_042

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDG_042 not in the Motif Atlas

Geometric match to IL_5TBW_042

Geometric discrepancy: 0.1085

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5NDG|1|1|A|1009
5NDG|1|1|G|1010
5NDG|1|1|A|1011
*
5NDG|1|1|U|1039
5NDG|1|1|A|1040
5NDG|1|1|U|1041

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L5

60S ribosomal protein L5

Chain M0

60S ribosomal protein L10