IL_5NDG_043

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

5NDG|1|1|C|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDG_043 not in the Motif Atlas

Geometric match to IL_5TBW_471

Geometric discrepancy: 0.1808

The information below is about IL_5TBW_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87495.1

Basepair signature

cWW-R-L-R-L-L-L

Number of instances in this motif group

1

Unit IDs

5NDG|1|1|U|1014
5NDG|1|1|U|1015
5NDG|1|1|C|1016
5NDG|1|1|C|1017
5NDG|1|1|G|1018
*
5NDG|1|1|U|1034
5NDG|1|1|G|1035
5NDG|1|1|A|1036

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M1

60S ribosomal protein L11-A

Chain SM

Suppressor protein STM1