IL_5NDG_080

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CU*GAG

Length

5 nucleotides

Bulged bases

5NDG|1|1|A|2324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDG_080 not in the Motif Atlas

Homologous match to IL_8C3A_087

Geometric discrepancy: 0.1173

The information below is about IL_8C3A_087

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5NDG|1|1|C|2128
5NDG|1|1|U|2129
*
5NDG|1|1|G|2323
5NDG|1|1|A|2324
5NDG|1|1|G|2325

Current chains

Chain 1

25S ribosomal RNA

Nearby chains