IL_5NDG_117

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

ACAC*GCGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDG_117 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.188

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5NDG|1|1|A|3163
5NDG|1|1|C|3164
5NDG|1|1|A|3165
5NDG|1|1|C|3166
*
5NDG|1|1|G|3284
5NDG|1|1|C|3285
5NDG|1|1|G|3286
5NDG|1|1|U|3287

Current chains

Chain 1

25S ribosomal RNA

Nearby chains