IL_5NDG_185

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

5NDG|1|2|G|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDG_185 not in the Motif Atlas

Homologous match to IL_4V88_442

Geometric discrepancy: 0.1786

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5NDG|1|2|G|1149
5NDG|1|2|G|1150
5NDG|1|2|A|1151
*
5NDG|1|2|U|1627
5NDG|1|2|U|1628

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D6

40S ribosomal protein S26-B