IL_5NDG_199

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AAUAG*CUUCU

Length

10 nucleotides

Bulged bases

5NDG|1|2|A|1346, 5NDG|1|2|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDG_199 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.262

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDG|1|2|A|1345
5NDG|1|2|A|1346
5NDG|1|2|U|1347
5NDG|1|2|A|1348
5NDG|1|2|G|1349
*
5NDG|1|2|C|1376
5NDG|1|2|U|1377
5NDG|1|2|U|1378
5NDG|1|2|C|1379
5NDG|1|2|U|1380

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain D0

40S ribosomal protein S20