IL_5NDG_221
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CCG*CUGUAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDG_221 not in the Motif Atlas
- Homologous match to IL_4WF9_114
- Geometric discrepancy: 0.3622
- The information below is about IL_4WF9_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10810.1
- Basepair signature
- cWW-L-cWS-cSH-cWW
- Number of instances in this motif group
- 1
Unit IDs
5NDG|1|3|C|28
5NDG|1|3|C|29
5NDG|1|3|G|30
*
5NDG|1|3|C|47
5NDG|1|3|U|48
5NDG|1|3|G|49
5NDG|1|3|U|50
5NDG|1|3|A|51
5NDG|1|3|G|52
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain L5
- 60S ribosomal protein L5
- Chain M1
- 60S ribosomal protein L11-A
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