IL_5NDG_241
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDG_241 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0762
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NDG|1|5|G|404
5NDG|1|5|U|405
5NDG|1|5|G|406
5NDG|1|5|A|407
5NDG|1|5|A|408
5NDG|1|5|A|409
5NDG|1|5|U|410
*
5NDG|1|8|A|13
5NDG|1|8|C|14
5NDG|1|8|G|15
5NDG|1|8|G|16
5NDG|1|8|A|17
5NDG|1|8|U|18
5NDG|1|8|C|19
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain l4
- 60S ribosomal protein L4-A
- Chain m7
- 60S ribosomal protein L17-A
- Chain o2
- 60S ribosomal protein L32
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