IL_5NDG_282

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

5NDG|1|5|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDG_282 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3635

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5NDG|1|5|G|1234
5NDG|1|5|U|1235
5NDG|1|5|G|1236
5NDG|1|5|G|1237
5NDG|1|5|C|1238
*
5NDG|1|5|G|1250
5NDG|1|5|A|1251
5NDG|1|5|A|1252
5NDG|1|5|U|1253
5NDG|1|5|C|1254

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain p0

60S acidic ribosomal protein P0