IL_5NDG_293

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGAUU*AGUUUUC

Length

12 nucleotides

Bulged bases

5NDG|1|5|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDG|1|5|G|1623
5NDG|1|5|G|1624
5NDG|1|5|A|1625
5NDG|1|5|U|1626
5NDG|1|5|U|1627
*
5NDG|1|5|A|1816
5NDG|1|5|G|1817
5NDG|1|5|U|1818
5NDG|1|5|U|1819
5NDG|1|5|U|1820
5NDG|1|5|U|1821
5NDG|1|5|C|1822

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain n7

60S ribosomal protein L27-A

Chain o4

60S ribosomal protein L34-A

Chain o8

60S ribosomal protein L38