IL_5NDG_306
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 5NDG|1|5|U|1931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDG_306 not in the Motif Atlas
- Homologous match to IL_5TBW_078
- Geometric discrepancy: 0.1039
- The information below is about IL_5TBW_078
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NDG|1|5|C|1918
5NDG|1|5|G|1919
5NDG|1|5|U|1920
5NDG|1|5|A|1921
5NDG|1|5|A|1922
5NDG|1|5|C|1923
*
5NDG|1|5|G|1928
5NDG|1|5|G|1929
5NDG|1|5|A|1930
5NDG|1|5|U|1931
5NDG|1|5|A|1932
5NDG|1|5|A|1933
5NDG|1|5|G|1934
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 6
- Small subunit ribosomal RNA; SSU rRNA
- Chain q1
- 60S ribosomal protein L41-A
- Chain q3
- 60S ribosomal protein L43-A
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