IL_5NDG_401
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAAAAAUUA*UAUAUUAGC
- Length
- 19 nucleotides
- Bulged bases
- 5NDG|1|6|U|794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDG|1|6|G|751
5NDG|1|6|A|752
5NDG|1|6|A|753
5NDG|1|6|A|754
5NDG|1|6|A|755
5NDG|1|6|A|756
5NDG|1|6|A|757
5NDG|1|6|U|758
5NDG|1|6|U|759
5NDG|1|6|A|760
*
5NDG|1|6|U|790
5NDG|1|6|A|791
5NDG|1|6|U|792
5NDG|1|6|A|793
5NDG|1|6|U|794
5NDG|1|6|U|795
5NDG|1|6|A|796
5NDG|1|6|G|797
5NDG|1|6|C|798
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain d2
- 40S ribosomal protein S22-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s9
- 40S ribosomal protein S9-A
Coloring options: