IL_5NDG_436

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDG_436 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.0798

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5NDG|1|6|G|1540
5NDG|1|6|G|1541
5NDG|1|6|G|1542
5NDG|1|6|A|1543
5NDG|1|6|U|1544
5NDG|1|6|A|1545
*
5NDG|1|6|U|1566
5NDG|1|6|U|1567
5NDG|1|6|C|1568
5NDG|1|6|A|1569
5NDG|1|6|A|1570
5NDG|1|6|C|1571

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c8

40S ribosomal protein S18-A

Chain c9

40S ribosomal protein S19-A