IL_5NDG_462

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

5NDG|1|1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDG_462 not in the Motif Atlas

Homologous match to IL_8P9A_290

Geometric discrepancy: 0.1275

The information below is about IL_8P9A_290

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

5NDG|1|1|U|1501
5NDG|1|1|C|1502
5NDG|1|1|A|1503
5NDG|1|1|A|1504
5NDG|1|1|C|1505
*
5NDG|1|1|G|1513
5NDG|1|1|G|1514
5NDG|1|1|A|1515

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M7

60S ribosomal protein L17-A

Chain M9

60S ribosomal protein L19-A

Chain O9

60S ribosomal protein L39